Plant MITE

SE2930006

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6
Aquilegia coerulea
SE2930006
hAT
Hat2
scaffold_11:502566-502904
TGCCTTAT
TAGGGCTGGAAACGGGT

Secondary structure and sequence

TSD TIR

5'

3'

TGCCTTAT           AC    CAG    ---      --   GTATATAAATCTGAATCCGAATATTATAAAGTAAATCGGAATCCGGTTCCGAATCTGATTCAGGTTTAAATAATTAATTCGAATCCGAGATATATCTGAAAACCCGACTAAATTCGACAATTTTCTA
        TAGGGCTGGAA  GGGT   ATTC   GGATCA  GAT                                                                                                                               
        |||||||||||  ||||   ||||   ||||||  |||                                                                                                                                
        ATCCCGACCTT  CCTA   GCCT   TAGGCT  AGG                                                                                                                               
TATTCCGT           CA    --C    AAA      TT   CTTAATAGGTTTATACGGTCTAAGCCTATATTTTTATGTGGGCTTGATTTTAAGCCTAAGTCTAAATATTATTCTCTGGATAAGCTTAGGCCTAAGTCTAAAATTAGACAAAAATTTTTTTACATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2930006

TGCCTTATTAGGGCTGGAAACGGGTCAGATTCGGATCAGATGTATATAAATCTGAATCCGAATATTATAAAGTAAATCGGAATCCGGTTCCGAATCTGATTCAGGTTTAAATAATTAATTCGAATCCGAGATATATCTGAAAACCCGACTAAATTCGACAATTTTCTATATACATTTTTTTAAAAACAGATTAAAATCTGAATCCGGATTCGAATAGGTCTCTTATTATAAATCTGAATCCGAATTTTAGTTCGGGTGTATTTTTATATCCGAATCTGGCATATTTGGATAATTCGGATTTCGGATAAATCCGCATCCACTTCCAGCCCTATGCCTTAT

Copy Cancel