SE2930007

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7
  • Aquilegia coerulea
  • SE2930007
  • hAT
  • Hat3
  • scaffold_108:195334-195885
  • GTTCATAC
  • ACTAGGGGTGGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTCAT              C    C   TC -  TCTATTTTACCACTAAACTGAAACCGAACTGTGCAAGCTGGTTCGGTTCGGTTCGGTTTCAAAAACCGAAAAATATTATTAAAACTGGATTGGACCGAACCGATTTAATTCAATTCGGTTCGGTTCGGTTTTCGGTTTGGGCTTTATTGTGGGCTTTTGTGTTTTGGGCTTTAATATCTTCGGTTTTTTTTTTTTTTTTGTGTAATCTAATGAATATTTGAATATAATCTAACATTTATAAAA
      ACTAGGGGTGGGCA GGTT GGT  G GT                                                                                                                                                                                                                                                   
      |||||||||||||| |||| |||  | ||                                                                                                                                                                                                                                                    
      TGATCCCCACCCGT TTTT TGG  C TT                                                                                                                                                                                                                                                   
CATACT              T    -   -- C  TTGGCTTAATTTTGGCCTTGGCTTGGCCCAGTTTTGACACAACTGGTTCTTGGCCAGTTTGGCTTGACCTTGACCTTGGCTTGGCTCATATATGTCAGGTCAAGGTCAAGGATAAGATTATAAAGCCAAGCTTGGCTTGGCTTGGCTTTTTTATATATAATTATATATATATATAAAAAAAAAATTAAAAAAAATAAATATATATATGCAATATATACAAAAAAAAACAAAAAAATAATAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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