Plant MITE

SE2910008

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8
Aquilegia coerulea
SE2910008
Tc1/Mariner
St1
scaffold_13:681250-681534
TA
TACTCCCTCTGTCCCAAATTATTAGTACTT

Secondary structure and sequence

TSD TIR

5'

3'

                      T       ATTCCA      A --   CCCAAAATATATGTCGCTTTTGACTTTTCAACACATATTAATTAAGTTAAATGGTTCATTTGTCTATACTACCCTTGCTTTGAGATTAGAGTAAT
TACTCCCTCTGTCCCAAATTAT AGTACTT      TTTTAG T  TGT                                                                                               
|||||||||||||||||||||| |||||||      |||||| |  |||                                                                                               T
ATGAGGGAGGCAGGGTTTAATA TCATGGA      TTATAA G  GAA                                                                                               
                      T       -AAACC      - AT   TAATTCCTTTGTAGTAAATAACAAACAGATGATTGAGATAAAAGATTAAATAGGGATAAATTATGATTAATATTACAGATTGAAAAGTAATCTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2910008

TACTCCCTCTGTCCCAAATTATTAGTACTTATTCCATTTTAGATTGTCCCAAAATATATGTCGCTTTTGACTTTTCAACACATATTAATTAAGTTAAATGGTTCATTTGTCTATACTACCCTTGCTTTGAGATTAGAGTAATTATTCTAATGAAAAGTTAGACATTATAATTAGTATTAAATAGGGATAAATTAGAAAATAGAGTTAGTAGACAAACAATAAATGATGTTTCCTTAATAAGTAGAATATTCCAAAAGGTACTTATAATTTGGGACGGAGGGAGTA

Copy Cancel