SE2920010

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10
  • Aquilegia coerulea
  • SE2920010
  • Mutator
  • M3
  • scaffold_22:1522800-1523197
  • TTTTTTTGG
  • GGAAGCCGGCTATTG

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTTTTTT   A           CCA   TAATTTATGTTATTGCCAAGCTAATTTATGCTATTGCCAAGGTGTATTTTTTTTTTTTTTGGACTTATTTGGCCTCAAATATATTATCAATTTATTTTTACCCCTAAACCCAAATTTTCAACAAATCCAAAGTACAAAGAGTAACTTGTTGAAATTCCACTAGGGTTCACTG
        GGA GCCGGCTATTG   AGC                                                                                                                                                                            
        ||| |||||||||||   |||                                                                                                                                                                             
        CCT CGGCTGATAAC   GTT                                                                                                                                                                            
GTTTTTTT   -           --A   CAATTATAAACGATGACGGTTCCATATAAAAAATTAATCTGAATAAACGGTAGATTTAAATTAACTAATTTAAATTATATTTTAAAATTTAAAATAACTTCTTACATCAGAAAAAATAAAGCCTAGCCTACTCTAAACATATCCTATTTATTTTGTGGTGGTGCATACCCAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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