SE2950012

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_12
  • Aquilegia coerulea
  • SE2950012
  • PIF/harbinger
  • To3
  • scaffold_13:5122415-5122653
  • TTA
  • AGGGCCCGTTCGGCAAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                  TCCTAAAAATGCA  --    AA TTCTGGAAAGGAAATAAGGTAAAAGCTTGTTCGGCAAAACACAAAAACAGAATTAGAAAGTACTTTTGGTAAGTCAGAAAAGG
  AGGGCCCGTTCGGCAAAC             TT  CCTT  C                                                                                   
  ||||||||||||||||||             ||  ||||  |                                                                                    
  TCCCGGGCAAGCCGTTTG             CC  TTCA  G                                                                                   
AT                  -----------TT  TC    -- TGCTTCCTTAAAGGAATTGTCATCGATGGTTTTTCCTTTTTCCTCTTTCCTCTTTCGATTACAAATTTTGAAGGGCACTTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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