SE2930013

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_13
  • Aquilegia coerulea
  • SE2930013
  • hAT
  • Hat5
  • scaffold_120:190924-191400
  • ATCATAAC
  • CATGGTTTTAAGAACCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATCATAAC              C   TTCTTTAGAGT    -      ATGCCGATCCCGGTTCTAACCACTGATTCAAGTTTATCTTGGCCGATTCTTTGTTATTTTTTAATTTAATATTTATTATTATGAATAAATATTTATTATTTTACTATTAAATTTAAGACTTTCTAATGGGAAACTTTTTTGGTTGAACAAATTTTACGGTTTATTTGTATATAATTTACTTATCACTATAAAAGAA
        CATGGTTTTAAGAA CGG           GAAT CGGGGT                                                                                                                                                                                                    
        |||||||||||||| |||           |||| ||||||                                                                                                                                                                                                    A
        GTACCAAAATTCTT GCC           GACT AGTTCA                                                                                                                                                                                                    
CAATACTA              A   -----------    C      AACTGAGCCGGCCAACCTTAGCCCTAGCCACCATAGGCTGAGCTTTTAAGTAACAACTGAACCTAGTAGTATCTTAGCCAAAATCTTAGCAACTTAGCTGGCTAAGAAATACATTTTGGCCTACTTAGCGGCTCAGTTTGGTCTTTAAAAATATATTAAAACAAAAAAACTAAAAAATTGATTTTGAATTTTAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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