SE2920023

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_23
  • Aquilegia coerulea
  • SE2920023
  • Mutator
  • M11
  • scaffold_25:1221268-1221591
  • TAATCCGTC
  • GAGGTAATTAGCGATACCCCCGGAATTCAAGGCAACATAGCGATACCCCCCAACTCCAAAAAGATTTGTGTTACTCCCCCAAATTATCTTCCGGTGAAAAAATAGACTTGAACTGCCATAAATACCCTTATACCACGTCAGCAATGGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATCCGTC   G                 -                                                     T            C   C         A                             A         - -AA      AG
         GAG TAATTAGCGATACCCCC GGAATTCAAGGCAACATAGCGATACCCCCCAACTCCAAAAAGATTTGTGTTAC CCCCCAAATTAT TTC GGTGAAAAA TAGACTTGAACTGCCATAAATACCCTTAT CCACGTCAG C   TGGTTT  
         ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||| ||||||||| |   ||||||  G
         CTC ATTAATCGCTATGGGGG TCTTAAGTTCCGTTGTATCGCTATGGGGGGTTGAGGTTTTTCTAAACACAATG GGGGGTTTAATA AAG CCACTTTTT ATCTGAACTTGACGGTATTTATGGGAATA GGTGTAGTC G   ATTAAA  
CTGCCTAAT   G                 G                                                     -            A   A         -                             C         T AAA      CT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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