SE2920027

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_27
  • Aquilegia coerulea
  • SE2920027
  • Mutator
  • M13
  • scaffold_1:4160313-4160881
  • ATAAAATTA
  • GGGAAAATTGGCGATAACCCCCCAGGTTTTGGTCACTCTTGGCAAGAACCCCCTCATTTGTCCATTTTTGGCGTTAACCCCCAACCCCCCAAATTAG

Secondary structure and sequence

TSD    TIR
5'



3'
ATAAAATTA                     C                                                            -AAC      AA    ACCTTGTGTTAC     T        ACCCCCTCA       G  --AA     T      TCAT                   C    G    -CC      A    CCC      CCT           AAAG      AC      AA    AA    AA   C  TAA   TAA   G
         GGGAAAATTGGCGATAACCCC CAGGTTTTGGTCACTCTTGGCAAGAACCCCCTCATTTGTCCATTTTTGGCGTTAACCCCC    CCCCCA  TTAG            CCAGT TACCCCTG         TATTTGA TA    CCCCC AATTTA    TAACAGAAGTTTACTAACA TTGT AACT   GTTAAC GAAC   TATTTG   AAACCCCCCGA    TAAAAA  TGAAAA  AAAA  AAAA  AAC CT   ATT   CTG 
         ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||  ||||            ||||| ||||||||         ||||||| ||    ||||| ||||||    ||||||||||||||||||| |||| ||||   |||||| ||||   ||||||   |||||||||||    ||||||  ||||||  ||||  ||||  ||| ||   |||   ||| A
         CCCTTTTAACCGCTATTGGGG GTCCAAAACCAGTGAGAACCGTTCTTGGGGGAGTAAACAGGTAAAAACCGCAATTGGGGG    GGGGGT  AGTC            GGTTA ATGGGGAT         ATAAACT AT    GGGGG TTAAAT    ATTGTCTTCAAGTGATTGT AGCA TTGG   CAATTG CTTG   ATAAAC   TTTGGGGGGCT    ATTTTT  ATTTTT  TTTT  TTTT  TTG GA   TAG   GAC 
ATTAAAATA                     A                                                            GTTA      GA    GTTAAAAAAACA     T        -AGTGTATA       G  GGAG     T      --TC                   T    A    AAA      C    TAT      ACT           ATCA      AA      -G    CA    AG   A  --C   CTG   C

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End