Plant MITE

SE2930028

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_28
Aquilegia coerulea
SE2930028
hAT
Hat9
scaffold_21:4267635-4267846
AATGTTCC
AATGTTC

Secondary structure and sequence

TSD TIR

5'

3'

         CCAG              ATC -  GT  G -  GT   GAGTAACATGTAACCTATATATTAAAATCTTGGGGGGTGCGATTCTTTATAGTTTTGCAAAAAAC
  AATGTTC    GGACGGATCCAGGA   T GA  TG G GG  GCA                                                                 
  |||||||    ||||||||||||||   | ||  || | ||  |||                                                                  
  TTGTAAG    TCTGCCTAGGTCCC   C CA  CG G CC  CCC                                                                 
CC       --TA              --- G  --  - G  --   ACGCTGGCGTGGGGGGTTTCAAGTTAAAAAAAGGATTTAAGATGATACTAGGAAGATATATATCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2930028

AATGTTCCCAGGGACGGATCCAGGAATCTGAGTTGGGGGGTGCAGAGTAACATGTAACCTATATATTAAAATCTTGGGGGGTGCGATTCTTTATAGTTTTGCAAAAAACTCTATATATAGAAGGATCATAGTAGAATTTAGGAAAAAAATTGAACTTTGGGGGGTGCGGTCGCACCCCCGGGCACGCCCCTGGATCCGTCTATGAATGTTCC

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