Plant MITE

SE2950035

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_35
Aquilegia coerulea
SE2950035
PIF/harbinger
To7
scaffold_2:2709305-2709700
TAT
GGCTGTGCTTGTTTACTTGG

Secondary structure and sequence

TSD TIR

5'

3'

TAT  C           A     ACAA     G  ATTAGTAGGTAGTAAAAAATTATTTAGAATTTTTTTTTCTAAAAGTTTCTATTTATTTCAGTATTGAGTGCTTGGTTAAGCATTGTAATTAAAACAGAAACTGACACGTGGTGACAGAGAAAAGAGGGGGACCACAGTTTAGTTAGAAGAAAGAGGAGAGAGCGG
   GG TGTGCTTGTTT CTTGG    ATTAT TA                                                                                                                                                                     
   || ||||||||||| |||||    ||||| ||                                                                                                                                                                     G
   CC ACACGAACAAA GGGCC    TTTAG AC                                                                                                                                                                     
TAT  A           -     ---C     -  CGCCTTTCGTTTAGGTGCAGTCTAAAAAGGTCAAATAAAGGAAAGTGTCTACGAACCGACCAATAGTTTTAAACATCCCGGTGATTTAAAAAAACGTTTTGTCATTTTGTCCAGTCTAAAAAAAGTGCTCAAATTTTAATACTCTTAAAAAATGTTGAGCACCAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2950035

TATGGCTGTGCTTGTTTACTTGGACAAATTATGTAATTAGTAGGTAGTAAAAAATTATTTAGAATTTTTTTTTCTAAAAGTTTCTATTTATTTCAGTATTGAGTGCTTGGTTAAGCATTGTAATTAAAACAGAAACTGACACGTGGTGACAGAGAAAAGAGGGGGACCACAGTTTAGTTAGAAGAAAGAGGAGAGAGCGGGGACCACGAGTTGTAAAAAATTCTCATAATTTTAAACTCGTGAAAAAAATCTGACCTGTTTTACTGTTTTGCAAAAAAATTTAGTGGCCCTACAAATTTTGATAACCAGCCAAGCATCTGTGAAAGGAAATAAACTGGAAAAATCTGACGTGGATTTGCTTTCCGCCAGATTTCCCGGGAAACAAGCACAACCTAT

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