Plant MITE

SE2930036

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_36
Aquilegia coerulea
SE2930036
hAT
Hat11
scaffold_10:5105076-5105288
CCTGGAAG
CTGGAAGCATAGTTTAA

Secondary structure and sequence

TSD TIR

5'

3'

  C    AA           AAC    A  TCGAGCGAAATTTCGAATCCTGGAAAAACGGTATATGCTAAGAATTTCGACACTAGAAAAGAATTTGGAATCTGAGTATT
   CTGG  GCATAGTTTAA   GCCG TT                                                                                
   ||||  |||||||||||   |||| ||                                                                                C
   GGTC  CGTATCAAATT   TTAT AG                                                                                
GAA    --           ---    -  CCCCTATAGTATAGGCGCATATAGGTGCTTAATACGGTCCTAAACTCTTTAGCCTATATATTTATAGGCACTTATAGGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2930036

CCTGGAAGCATAGTTTAAAACGCCGATTTCGAGCGAAATTTCGAATCCTGGAAAAACGGTATATGCTAAGAATTTCGACACTAGAAAAGAATTTGGAATCTGAGTATTCATGGATATTCACGGATATTTATATATCCGATTTCTCAAATCCTGGCATAATTCGTGGATATACGCGGATATGATATCCCCGATATTTTAAACTATGCCTGGAAG

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