Plant MITE

SE2950038

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_38
Aquilegia coerulea
SE2950038
PIF/harbinger
To8
scaffold_61:1296764-1297326
TTA
AGAGCAATCCCAATGGGAGGGCA

Secondary structure and sequence

TSD TIR

5'

3'

TT                 A     GTT    -    TCCACGTAGGTGCCACATAAGCAAAACCACCTTCAAAATCACTCTCTATCCATGGTAGTCAAAAACCCCTGCGAAGTGGTGCCAATGGAAAAATTTGGAAATGTCAGTTTAGGAAAATTAAATAGCTTATAAGACGGAACTTTGAGTTCCGGTAATTTTACTAAATATAAGACAAAACTCTGTATTCCGTTTTTTTTTTTTTTTTTTAAAGTGTATAAGACGGAACTCTGTATTCCGTTGTTTTT
  AGAGCAATCCCAATGGG GGGCA   TGGT GCCT                                                                                                                                                                                                                                                     
  ||||||||||||||||| |||||   |||| ||||                                                                                                                                                                                                                                                      
  TCTCGTTAGGGTTACCC CCCGT   CTCT CCCG                                                                                                                                                                                                                                                     
AT                 C     AAA    T    CCATCATACTTTACGGGAGAGTCGGTTTTAAGGAAGGGGTTACCTTGCCACCCAGTTTATAAGTTTCCACCAATCTTCAAGGTTACCGTAAACTCTCCCCTTATCTCACGGTAGGTTTTACGGTACAATTAACGTATTCTGCCTTGTGTCACAAGGCCAAGTTGTGAAAAAGCCTTGAGTGTCAAGGCAGAATATGTGAAATAGAGTATACCTTGAACTTCAAGGCGGAATATGTGAAGTTTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2950038

TTAGAGCAATCCCAATGGGAGGGCAGTTTGGTGCCTTCCACGTAGGTGCCACATAAGCAAAACCACCTTCAAAATCACTCTCTATCCATGGTAGTCAAAAACCCCTGCGAAGTGGTGCCAATGGAAAAATTTGGAAATGTCAGTTTAGGAAAATTAAATAGCTTATAAGACGGAACTTTGAGTTCCGGTAATTTTACTAAATATAAGACAAAACTCTGTATTCCGTTTTTTTTTTTTTTTTTTAAAGTGTATAAGACGGAACTCTGTATTCCGTTGTTTTTTTTTTTGAAGTGTATAAGGCGGAACTTCAAGTTCCATATGAGATAAAGTGTATAAGACGGAACTGTGAGTTCCGAAAAAGTGTTGAACCGGAACACTGTGTTCCGTCTTATGCAATTAACATGGCATTTTGGATGGCACTCTATTCCCCTCTCAAATGCCATTGGAACTTCTAACCACCTTTGAATATTTGACCCACCGTTCCATTGGGGAAGGAATTTTGGCTGAGAGGGCATTTCATACTACCGCCCTTCTCAAATGCCCCCCCATTGGGATTGCTCTTA

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