Plant MITE

SE2930047

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_47
Aquilegia coerulea
SE2930047
hAT
Hat16
scaffold_23:3081141-3081353
AGAAATTC
GAAATTCCTAAGTAACAT

Secondary structure and sequence

TSD TIR

5'

3'

A   A   -   A       TAATACTG    G  --    GTGTCTGACACGGGTACGGAGTATCCGACACAGCAAGATATCAAAAAAATAAGAGGTTCCTAAGCTAAAATT
 GAA TTC CTA GTAACAT        GTGC TG  TGTC                                                                        
 ||| ||| ||| |||||||        |||| ||  ||||                                                                         
 CTT AAG GAT CATTGTA        CCCA TG  GTTT                                                                        
    A   A   A       --------    -  AG    AAGATTTTTTTATAGACACAGCATGGGCACAGCCTATGTGCCTGTCTTGCTGCGTACCTATGTACCTATGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2930047

AGAAATTCCTAAGTAACATTAATACTGGTGCGTGTGTCGTGTCTGACACGGGTACGGAGTATCCGACACAGCAAGATATCAAAAAAATAAGAGGTTCCTAAGCTAAAATTATGTATCCATGTATCCATGCGTCGTTCTGTCCGTGTATCCGACACGGGTACGACACAGATATTTTTTTAGAATTTGGAGTACCCATGTTACATAGAGAAATTC

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