SE2950050

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_50
  • Aquilegia coerulea
  • SE2950050
  • PIF/harbinger
  • To11
  • scaffold_9:3398600-3399043
  • TAA
  • AGAGCAATGCCAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA  A   A       --------ACTAAAA         A   -----------------    AGCAGAAAAAGTCAGGTGACACATCAGCATTGGCAGTAACTTTTAACACTAAAAGTTTCATGTAGGTTTTAGGGGAGCCAACGCAGATCTGCAAAAACTTAACCTGTTAGATAATTATCCGCCACAGTTTTCTGGCGGATAACACTAATTGCCAGAGTTTCTGGTGGATA
  AG GCA TGCCAAT               GTGTCACCT GAC                 TTTT                                                                                                                                                                          
  || ||| |||||||               ||||||||| |||                 ||||                                                                                                                                                                           
  TC CGT ACGGTTA               TCCAAAATC CCT                 TCGG                                                                                                                                                                          
AA  C   C       CCCTCCAAAATTTCC         -   CCAAAATTTTTATCAGA    TTGCCCGTCAAAATTCCCCAAAATTGCAACAGTCAAAATTTATTCATACATATATGTGTGTGGGTGAATTTTGACTGTTGTGACTGTTCCATATTCAATAGACGGTTTTTGACACCGCCTATCCGAATAAGCGGTCTTTGACACCGCCAATCTTTGACACCGTCTATTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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