SE2930060

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_60
  • Aquilegia coerulea
  • SE2930060
  • hAT
  • Hat19
  • scaffold_1:6082993-6083455
  • GCCAACAA
  • TAGGGGTGCAATTCGAGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
GCCAACAA     G       C     ---        -   -  TAGGGTAT  -----    A         CTACTAACCGAGCCGAGCTCAAAATGAAGACCGAGCTGAAGTATGAACTCGAGCTAGGCTCGCGAGCCAACTTTAAAACTCGAGCTCGCTTCGTTTAGCTCGTTGGCTCGCTCGGCTTGTTTCGGCTCGGTTTCAGCTCCTTTCCTGGGCTCGGCTCGGCTCGTTAG
        TAGGG TGCAATT GAGCC   AAACGAGC CGA GC        GG     TCGA CTCGGCTCG                                                                                                                                                                       
        ||||| ||||||| |||||   |||||||| ||| ||        ||     |||| |||||||||                                                                                                                                                                        
        ATCCC ACGTTAA CTCGG   GCCGAGTC GAG CG        AG     CTCG AGCCGAGCC                                                                                                                                                                       
AACAACCG     G       A     CTC        C   C  --------  CTATT    -         GAGCGAGCAAATGGATTTACTCGGCTCAAGCTCGTCCAAAAAGTCGAGCAGTGTTCGGGTTCGGCTCGAGCTCGAACTCGAGATTTGCTCGACTCGGCTCGTCGAGTAGTTTAATAATGATATAATGGGGAATATATTTATGTTTGTATTTTTTGGCATTATAAATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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