SE2930062

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_62
  • Aquilegia coerulea
  • SE2930062
  • hAT
  • Hat20
  • scaffold_28:2669621-2670221
  • GAAATATT
  • TTCTGTGTTGCATGGGAACGGCAGTTTTTGCG

Secondary structure and sequence

TSD    TIR
5'



3' 
GAAATA                A    CA  TTT           C   -   GATACGTGTAGACACAGATTCGGACTCAGATGCAGTACAGATTCGTCCATCCATTGGATAGAAAGATAAATTTTTTAATTATAAACTTAGAACTTACAGGTGTACTGTGTTAATGAAAACACTTTAACATGTGACACCATCATAAAGCCACCTGTGGCATACCAATAAAAAAGCCACCTGTGTTGTTTTGTGACACTTGTGGACAAGTGAGCCACCTGTATTATTTTGTCCACTTGTGGACTTAGGATTT
      TTCTGTGTTGCATGGG ACGG  GT   TGCGCCGAGTC TGT GTC                                                                                                                                                                                                                                                          
      |||||||||||||||| ||||  ||   ||||||||||| ||| |||                                                                                                                                                                                                                                                          T
      AGGACACAACGTACCC TGTC  CA   ACGCACATCCT CAG CTG                                                                                                                                                                                                                                                          
TTATAA                A    --  --T           -   A   TGCCCATGCCTCACAGACTGTGCTGTTTGAGATTTTTAATTCTAAGCCCCTGAGATGTATAAAAAATATCAAAAAAAATATTAAAATAAGGATGTATATGTTTTATAATATTTGATTATATAAAAACATTCTCTTTATACCTTATGATCATATGATGTCTTAATAATTTAATCATTAATTTTAAAATTATTCTCTGATAATACGTTAATGAACGTACAATGAATTCAGTCACATTCTTAATCCACTTAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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