Plant MITE

SE2950064

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_64
Aquilegia coerulea
SE2950064
PIF/harbinger
To18
scaffold_3:3816083-3816847
TTA
AGAGCATCTCTAATGGGTCTTCTATA

Secondary structure and sequence

TSD TIR

5'

3'

TT                             AAAATTATAGGAATTCGAAAACAAAGCAGCCCTAACGCGTCGTCTAAAAAAATAGCAGTCGGCCATCCACGTAGGACGTGGTGGGCCGGTCTGCTAAAACTTTGGCTAAAATCGCTGGAGAGATAGGATTATAGGAAAATTCTAAAATTATTTGTTCCACGCTAGTTCGACTAGCGTGGAACCATTTTAACTAAATTTTTTTTGTTCCGCGCTAGTCTAACCAGCGTGGAACCATTTTAATTAAATTTTTTTGTTCCGCGCTGGTTGCACCAGCGTGGAAACATAATTTTCAAACGGCTATAATTTCAAGAGCTAGAACAAAGAAGAGGTAGAAGATGATTTTCAAGAGCT
  AGAGCATCTCTAATGGGTCTTCTATATCC                                                                                                                                                                                                                                                                                                                                                               
  |||||||||||||||||||||||||||||                                                                                                                                                                                                                                                                                                                                                               A
  TCTCGTAGAGATTACCCAGAGGATATAAA                                                                                                                                                                                                                                                                                                                                                               
AT                             CTTGCTGTGTATCTCAATACCTGCTGTGTATCCACGGTGCAGCAAAGGGTTTTTTTATAAATCGTGCAGCAAGTTTGGATATAGTCCCCGTAGGGATTGCGCGAACTAAAAAAAAACGATATTAAGATAGAAGGTGCGTCCAAGTTGGTCGCACCTTCATAAAAAACCCCCGACCTGAATTAATTGATTGGTTCGGGTTCATGCAAATTGAATACCTAGACAAAATTGAATCCGGGTTCATGCAAGGTGCGACCAAGTTGGACGCACCTTGACATTTAGATCACAAAAAAAAAGGTCGGTCATGAAGTAGAATAGAAGAAGAAGAAGTAGGCGGTAACAATAAGAAACAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2950064

TTAGAGCATCTCTAATGGGTCTTCTATATCCAAAATTATAGGAATTCGAAAACAAAGCAGCCCTAACGCGTCGTCTAAAAAAATAGCAGTCGGCCATCCACGTAGGACGTGGTGGGCCGGTCTGCTAAAACTTTGGCTAAAATCGCTGGAGAGATAGGATTATAGGAAAATTCTAAAATTATTTGTTCCACGCTAGTTCGACTAGCGTGGAACCATTTTAACTAAATTTTTTTTGTTCCGCGCTAGTCTAACCAGCGTGGAACCATTTTAATTAAATTTTTTTGTTCCGCGCTGGTTGCACCAGCGTGGAAACATAATTTTCAAACGGCTATAATTTCAAGAGCTAGAACAAAGAAGAGGTAGAAGATGATTTTCAAGAGCTAGAACAAAGAATAACAATGGCGGATGAAGAAGAAGAAGATAAGATGAAGTACTGGCTGGAAAAAAAAACACTAGATTTACAGTTCCACGCAGGTTGAACCAGCGTGGAACGTACTTGGGCCTAAGTTAAAACAGATCCATAAGTTAAACGTACTTGGGCTTGGTTAGTTAATTAAGTCCAGCCCCCAAAAAATACTTCCACGCTGGTTGAACCTGCGTGGAAGATAGAATTATAGCAAAAAAAAATCAAGCGCGTTAGGGATGCCCCTGATATAGGTTTGAACGACGTGCTAAATATTTTTTTGGGAAACGACGTGGCACCTATGTGTCGTCCATAACTCTATGTGTCGTTCAAATATAGGAGACCCATTAGAGATGCTCTTA

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