SE2930065

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_65
  • Aquilegia coerulea
  • SE2930065
  • hAT
  • Hat21
  • scaffold_9:6808182-6808861
  • GTTTGATC
  • TTGATCCATAGGTGAAAATATCGAA

Secondary structure and sequence

TSD    TIR
5'



3'
GT    T             T      TAATCCC -        ATTCATGAAAAAACGGATTATTCCACGAATATCCCAAAGCCAGTGTCGAAATGGGGAGGTTTGGCAAATATGCTTCTCGCGAAATATTGTCCGAATATTCGCGAATATTCCAAAAAATTCGGAAGAATGGGGAGGTTTTCTGCCAATATCATGTTTTTCTTCTTCTTTCAATGTATAAACTTATAATTCAACAATAGAATATATAAACACACCCCTTTTTTATTATATAACCATTATCATCCAAAGAAAGGCATACGATTTAATTTAAACACACCCACTTTTTATTATATGGGTTATG
  TTGA CCATAGGTGAAAA ATCGAA       G AATATCCG                                                                                                                                                                                                                                                                                                          
  |||| ||||||||||||| ||||||       | ||||||||                                                                                                                                                                                                                                                                                                           
  AGTT GGTATCCACTTTT TAGTTT       A CCCTCCTA                                                                                                                                                                                                                                                                                                          
CT    T             T      ---TTAA G        TAAGTACTTAAAAAAGCAAAAAACCCTTAAACCTCGCTATACCGTATGCCTATATTATGCTTTGTTTTTGGAGGGGTAAGGCTGGACTATTTAAGCCTATAATTGCTTTTTAAGCTTTTTATGCTTTAAATACTTTTTAAGCCTTAGATACCCAACAGAAGGGGTTCAAAGTTCCAGACGTTTTTGGTGGTATGGAAAACAGAGGTTCAAAGTTACTAAGAATGTCACAAAATATTGAATAGATCAAAAGAGATATGAACGTTAAAGCTTAAAGTTATGGGTTTAAGTAGATATTTAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End