SE2950070

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_70
  • Aquilegia coerulea
  • SE2950070
  • PIF/harbinger
  • To12
  • scaffold_68:534781-535320
  • TAA
  • AGACCATCTCCAACTGCTACAGTAGATTATTTTTTTATTTTGT

Secondary structure and sequence

TSD    TIR
5'



3'
TA              ----     -CAG     T    T TT    T  TA       -----T -  ATAGAAAAGCCACACAAACAACTCCAACCCATTTTCTTATTTTTACCCCACCAGCCTTCTTCACACAATGGCTGATGATATATAACATTAATTTAATCTATCTACCCAAGTCTTTGTCCACATATCAACATATCACCCATATTTTTACTTATATACCTTTTCACTTTTTTTTTTATATATTAATTTTTTTGGAATACCAATACATTAA
  AGACCATCTCCAAC    TGCTA    TAGAT ATTT T  ATTT GT  TTTGTGT      G TT                                                                                                                                                                                                                
  ||||||||||||||    |||||    ||||| |||| |  |||| ||  |||||||      | ||                                                                                                                                                                                                                 
  TCTGGTAGAGGTTG    ACGAT    GTCTA TAAG A  TAAA CA  GAGGTTG      G TA                                                                                                                                                                                                                
AA              CCCA     AAGA     -    C TT    C  --       CCCAAC A  AAAGAGTTTAAAAAAAAAAAAAAACGATAAAAGAGTTTAGGACCTAAACTCTTATCGTTATAATAAAAAATAACGCAATAGGCGCCAACTTGTTACTAACTATTCTGCCTACTGTAGGTTGTTGGAACTTATATTAGTGGTCGGAAAACCCAACGTTTTCGATTACCAACCACTGTAATATATCAAAACCATAAGGTTATTATGGGAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End