Plant MITE

SE2910081

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_81
Aquilegia coerulea
SE2910081
Tc1/Mariner
St2
scaffold_148:41568-41877
TA
TACTCCCTCCGTCCAACTTTTATAGGCGCTTTTGGTGTTT

Secondary structure and sequence

TSD TIR

5'

3'

                            -C       G   ACA   G  -   AGAAACCATAATTAATGATGTAAAAGTAATAATTTTTTTACAAATATTTCCAGTTTTGCCCTTAATTTAATACACCACTTCAAGATATTCAAACTTAGAAAATT
TACTCCCTCCGTCCAACTTTTATAGGCG  TTTTGGT TTT   CAT GA TTA                                                                                                        
||||||||||||||||||||||||||||  ||||||| |||   ||| || |||                                                                                                         
ATGAGGGAGGCAGGTTGAAAATATCCGC  AAAGCCG AAA   AAA AC GGG                                                                                                        
                            AA       G   ---   -  A   TTTTAGAACAGGTAAAATAGTAAGAGTTCCACTTTTTATTAGATCTAATGGTTTAATAGGAATAATTAAAACGTACCAATAATTGGTAAAGTTTCAGAATAAGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2910081

TACTCCCTCCGTCCAACTTTTATAGGCGCTTTTGGTGTTTACACATGGATTAAGAAACCATAATTAATGATGTAAAAGTAATAATTTTTTTACAAATATTTCCAGTTTTGCCCTTAATTTAATACACCACTTCAAGATATTCAAACTTAGAAAATTGGAATAAGACTTTGAAATGGTTAATAACCATGCAAAATTAATAAGGATAATTTGGTAATCTAGATTATTTTTCACCTTGAGAATGATAAAATGGACAAGATTTTGGGACAAAAAAAGGCCGAAAAACGCCTATAAAAGTTGGACGGAGGGAGTA

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