SE2930083

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_83
  • Aquilegia coerulea
  • SE2930083
  • hAT
  • Hat6
  • scaffold_10:5518143-5518530
  • AACTAAAC
  • CTATGTAACAT

Secondary structure and sequence

TSD    TIR
5'



3' 
AACTAAAC   T       G    CTCCATATTGTCAAAAAAATCCGTGTCCGATACACGGACACTCGACACACGTGTCGGACACACATGGACACGCTTACAAACCTATGCACATGATTCGGGTTAGAATTTGTTGTAAAACCCTGATATATGAAGAAAAGGAAAGAGATGAGCAAGAATTTATATATTCATCA
        CTA GTAACAT GACA                                                                                                                                                                          
        ||| ||||||| ||||                                                                                                                                                                           
        GAT CATTGTA CTGT                                                                                                                                                                          
CAAATCAA   T       A    GTCCATGTACATAGCCACAGGCTGTGTCTATGTTTCACAGCCTATGCCGTAGGATTTTAGTCAGCTGTGTCCCTATGTCTAACACTAAATAAATATTAGGTAAAAAATCTAGATCTTGTATGGTAGAGAATAAGAGAAGAAAGAAAAAATAGAAAAGAAACTAACATTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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