SE2950086

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_86
  • Aquilegia coerulea
  • SE2950086
  • PIF/harbinger
  • To21
  • scaffold_76:613458-613852
  • TAA
  • AGAGCATCTCTAATGCACGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                     CTAAATTTAGCAT   ACATAGGCGACACATCAACATTTATAGTATTTTTTAAGATTTTGCAACCTTCTAAATTTAGAACTTTTATTTTAAGACTATGCACATAAACTTTGCAACCTTCTATTGATGTAAAAAGAATAAAAAAAATGGGGAAGAAAAAGACTATTTATAAAAATAGATT
  AGAGCATCTCTAATGCACGGT             GCC                                                                                                                                                                   
  |||||||||||||||||||||             |||                                                                                                                                                                    
  TCTCGTAGAGATTATGTGCTA             TAT                                                                                                                                                                   
AA                     ---------TTTT   CAAAAAAGATATTAAAAAAGGGATTGCGTATACGATAGTGAGTACGATATTTATGTAGATAATATTTGTACCAAGTTAAACTTTGTTTTATATGTTGGCAGATAGAGATTGTTTACTAAAGAAATAATATACAAACCTTTCATGTAGTTAAATAATAGTAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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