SE2930098

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_98
  • Aquilegia coerulea
  • SE2930098
  • hAT
  • Hat26
  • scaffold_18:546795-547407
  • TACAAAAC
  • TAGGGCTGGCAATGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TACAAAAC                CC      GACCGGGTATTAGAAATACCAGACCTGAACCATTAAAAAACCTAATAGATCCGGACCTGAATCCAGACCCTATTGGGTCCAAAAGTAAAAAACCATACCCGTACCAAACCTTAACGGATCAGATCCGGGTTGGATCCGGATCTTTTGGCTAACAATTGATTTGTTAAATTTATGTATACCAACTTAAAAAAAATATTTTACTTTTTTAGAATCTAGATATATTTGGTAAATATGGTAAATGTTTGTATTGATTTGTATGTTTTTAAGGTAATTGA
        TAGGGCTGGCAATGGA  GGTTCG                                                                                                                                                                                                                                                                                   
        ||||||||||||||||  ||||||                                                                                                                                                                                                                                                                                   T
        ATCCCGACCGTTACCT  AGCCCA                                                                                                                                                                                                                                                                                   
CAAAACAT                --      ATCTGGGCTTTAGGCTAGACTTGGCTATTCTCGCCCAAACCATGATATCAAAATACAAAACCAAGCCCAGGCCAAGGATTTTTATTTTGGGCTAAGAATAACCAAGCCCATATCTTAATTACCTATGGCTTGGATATACCTGGGCTGTACTTAAGAAATCAATAAAACTTATAAAATTTAAATGATTGTGATGTTTATACAGTATTTTTAATATATAAATTCTTTGTACTGAAAACGTTTATATTAAAGATTATGATTGGTAGAAGGTTTATATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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