SE2910101

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_101
  • Aquilegia coerulea
  • SE2910101
  • Tc1/Mariner
  • St3
  • scaffold_56:222292-222579
  • TA
  • TACTCCCTCCGTCCCTCTTTTATAGGTTGATTAGTGTTTTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
                                A  ---       A --  A  TTAAGAAAGTGGTGGAAAATGGTTTATTTGCATTTAATTGTAATATTATTTTTAAAAATACCCTTTTTCATTTGTTATGTACATTTAATGCTA
TACTCCCTCCGTCCCTCTTTTATAGGTTGATT GT   GTTTTTC C  GC TA                                                                                             
|||||||||||||||||||||||||||||||| ||   ||||||| |  || ||                                                                                              
ATGAGGGAGGCAGGGAGAAAATATCCGACTAA CG   TAAAAAG C  GG TG                                                                                             
                                A  GTT       A AG  -  ATATATCAGGTAAAATGTGAAGTTTTGTCAGTTATTTTGTTCACTGTTTAAATGGGGAATAATCAACACTTTTAAGAGAATTATATATCGGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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