SE2950104

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_104
  • Aquilegia coerulea
  • SE2950104
  • PIF/harbinger
  • To26
  • scaffold_2:3914225-3914634
  • ATT
  • TGGCTGTGCTTGTTTCACGG

Secondary structure and sequence

TSD    TIR
5'



3'
AT                    GGAAACTC  CT        T  --C   T    A    A  ----AAG       ---------A       C  GC  ------G    -----T  A  AAATTATATAGGGTCCACGGAAAACTTTGTAAAACAGATAAAACACCTCATCATATATTTCGGGTTTGTTATAACCAGATTAATTTGGAAAACGGCTT
  TGGCTGTGCTTGTTTCACGG        TG  GAAAACAA GA   ACG CAGA TTTT GA       TTTACTT          TTTGCAG GT  TT       GTGG      AC CC                                                                                                  
  ||||||||||||||||||||        ||  |||||||| ||   ||| |||| |||| ||       |||||||          ||||||| ||  ||       ||||      || ||                                                                                                   
  ACCGACACGAACAAAGTGCC        AC  CTTTTGTT CT   TGT GTCT AAAA CT       AAATGAA          TCTTTTG CC  GG       CGAA      GT CA                                                                                                  
TT                    -ATTAAAT  --        T  AAA   -    A    A  CAAGACA       AACAAAACAT       -  --  CTACATA    CAATTA  -  ACGTTTTTTAGGCCTTTTGACATCTCTCTCCTCTCTTCTCTGATTTTATTTATTTTTATTCTCTCTCTTTCAGTCTCTTCTCTCTCTTTCGCTCTCTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End