SE2920106

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_106
  • Aquilegia coerulea
  • SE2920106
  • Mutator
  • M29
  • scaffold_38:907815-908365
  • AAAAAATAG
  • GAGAGCCGGTATCCAAGCCCCACCAATTGGTAATTAAGCCCCA

Secondary structure and sequence

TSD    TIR
5'



3'
AAAAAATA    GC             C                A      CTAAATAAATTTACTAAT  C    AT    CAAA   TAA     AAAAATGAGTATGCCCTAGTTTTTGCACCTCATCTCTCTTCTATTTTTTCAGTAAACACACCCCATACAAAATCTAATTTTCTTCCATCTTCCCTATGACCCTAGCTATTAATTAAAAACAGATTCTTCTCTATTCTTTTTTATGTATCTGTTTCTTTAAACTAAAAAAATCAATTTTAAAAAAGAAAAAC
        GAGA  CGGTATCCAAGCC CACCAATTGGTAATTA GCCCCA                  AC GGTA  ATCC    CAA   TAGGG                                                                                                                                                                                               
        ||||  ||||||||||||| |||||||||||||||| ||||||                  || ||||  ||||    |||   |||||                                                                                                                                                                                               A
        CTCT  GCCATAGGTTCGG GTGGTTAACCATTAAT CGGGGT                  TG CCAT  TAGG    TGG   GGTGG                                                                                                                                                                                               
ATAAAGAA    AC             T                C      ------------------  A    --    ---A   ---     GACCAAGTTAATCAGTCATAAGGTTGGGGTGGATCATTTATGTGGGATTAAACATTTGATCTTAAAAGTCAAAAAGAAAGAAACAGAGTTTTTTTTATTTATTTATTTATTTTACTTCCGTTTGGCTTCTTCTTTGTTCTCTCTTTTTTTCAGAGAGGTAAAAATAATCAGTAAAACTCTTCAAAGAAGAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End