SE2920111

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_111
  • Aquilegia coerulea
  • SE2920111
  • Mutator
  • M32
  • scaffold_5:8002569-8002794
  • ACCTCTCAG
  • CAGAGAATTTTATATGTGTAGCTTACTTGTATGTGGGTGTGTACACCCAATCA

Secondary structure and sequence

TSD    TIR
5'



3' 
ACCTCTCAG                       T                             CAAA          G A    TAATATAA    GTATGGGTTTAGTTAACCC
         CAGAGAATTTTATATGTGTAGCT ACTTGTATGTGGGTGTGTACACCCAATCA    ATGCCATGTG C ATAA        CCTA                   
         ||||||||||||||||||||||| |||||||||||||||||||||||||||||    |||||||||| | ||||        ||||                   T
         GTTTTTTAAAATATACACATCGG TGAACATACACCCACACATGTGGGTTAGT    TACGGTGCAC G TATT        AACT                   
GACTCTCCA                       T                             ATAC          A A    ---TTACC    TTTTGACTAGTTCGGGTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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