SE2950113

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_113
  • Aquilegia coerulea
  • SE2950113
  • PIF/harbinger
  • To13
  • scaffold_10:6877475-6877903
  • TTT
  • GGCTGTGCTTGTTTACCCGGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTT             TA       -------AA       AAT       --C    C TCCATTTTATGTTTTTTTGCTTTTCTGATTGCTTGTTGATTCAAGTTTATATGGGTCCCACTGCTAAAAAAATTATTAAACTGTAAACCACGTAAGCAAATACTACGGTTTAGTGAAACCCGGAATTCTAAGTAAAACAGAAAATCAAGCCTTCTTTTGTG
   GGCTGTGCTTGTT  CCCGGAA         AGACGGG   GCAAAAA   ACGT A                                                                                                                                                                 
   |||||||||||||  |||||||         |||||||   |||||||   |||| |                                                                                                                                                                  
   CCGACACGAACAA  GGGCCTT         TTTGCCT   TTACCTT   AAAT T                                                                                                                                                                 
TTT             AG       CAAAACCCC       ---       TGC    - TGAAATTTTTCCAATTTTTTTTTAAGGTGTGAAAGGTAAATAATGTATATAAACAACGAACAAACTCGTGTTAGTATTTTCTCCTTTCTCTCTGCACCGCTCTATTTTCTAAGACTTCTGGTTACCCCTGGTGTTTTCTCCGAACTAAAAGACAACCCCTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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