Plant MITE

SE2920115

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_115
Aquilegia coerulea
SE2920115
Mutator
M33
scaffold_28:558097-558623
TACTAATTA
TAGGGGTTTTAAGACTTTGGAACACCTAAATAATGCCTATTTAGGAAATGAGACGCTTTTAATTGGTATTTAGAGTTTGGGGCACCTTCCGTGAGTTGACTGCGTTGACTGTTGTTTGCTT

Secondary structure and sequence

TSD TIR

5'

3'

TACTAAT          A         AAC      A                    A                         T       C     -  G         CGT      -T    T    GTTAA     TTGAAAATAACAACATTACCCCTCCATGTGTTTAGCACGAGATTGAATTTTAATAACAAAATCGTTACACATGTCATTATATCATCCATTGATTCCATCTTACGATTGATAAATTGACACGTGTTGA
       TAGGGGTTTT AGACTTTGG   ACCTAA TAATGCCTATTTAGGAAATG GACGCTTTTAATTGGTATTTAGAGT TGGGGCA CTTCC GT AGTTGACTG   TGACTG  TGTT GCTT     ATATT                                                                                                                               
       |||||||||| |||||||||   |||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||| || |||||||||   ||||||  |||| ||||     |||||                                                                                                                                
       ATCCCCAAAA TCTGAAATT   TGGATT ATTACGGATAAATCCTTTAC CTGTGAAAATTAACCATAAATCTCA ACCCCGT GAAGG CA TTAACTGAT   ACTGAT  GCAA TGAG     TTCAG                                                                                                                               
ATTAATC          A         CGA      A                    C                         T       A     G  G         AAT      TG    C    -----     TCTCTTGAGTATAAAATATTTATGGGTATTATGGGACGTGTTCACAGGATAAGGGATTAAAATAAATTGTGTACCACAGAAGAAGAGATTATTCATTTTAGGGCTTTCCAAACGTTCCCTACTATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2920115

TACTAATTAGGGGTTTTAAGACTTTGGAACACCTAAATAATGCCTATTTAGGAAATGAGACGCTTTTAATTGGTATTTAGAGTTTGGGGCACCTTCCGTGAGTTGACTGCGTTGACTGTTGTTTGCTTGTTAAATATTTTGAAAATAACAACATTACCCCTCCATGTGTTTAGCACGAGATTGAATTTTAATAACAAAATCGTTACACATGTCATTATATCATCCATTGATTCCATCTTACGATTGATAAATTGACACGTGTTGATATATCATCCCTTGCAAACCTTTCGGGATTTTACTTATTAGAGAAGAAGACACCATGTGTTAAATAAAATTAGGGAATAGGACACTTGTGCAGGGTATTATGGGTATTTATAAAATATGAGTTCTCTGACTTGAGTCAACGGTTAGTCATAATAGTCAATTGACGGGAAGATGCCCCATACTCTAAATACCAATTAAAAGTGTCCCATTTCCTAAATAGGCATTAATTAGGTAGCTTAAAGTCTAAAAACCCCTACTAATTA

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