SE2950117

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_117
  • Aquilegia coerulea
  • SE2950117
  • PIF/harbinger
  • To32
  • scaffold_117:90113-90485
  • TAA
  • AGAGCATTCCCAATGGTAAAACACTTTTAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  -------AA           -GG G      -------   A  GTTTTAA      TTGGGGTTTTCAATGGTTTTAACGAAAAAAGGGTTTTAGTGTTTCCAATGGTGGATTATTGAAACCGCAATCTATGTGGGGTATGGATCCATACCGCACTCATTGTGGCGGATGGATCTT
  AGAGCATTCCCAATGGTA         ACACTTTTAGT   T CCACAT       AGG TG       GGAATT                                                                                                                        
  ||||||||||||||||||         |||||||||||   | ||||||       ||| ||       ||||||                                                                                                                        C
  TCTCGTAAGGGTTACCAT         TGTGAAAATCA   G AAAATC       TGA AC       TTACCA                                                                                                                        
AA                  CCAAAATCG           ATT -      ACTTTTG   -  -----GG      TCGAAAATTGTGTGAAAAGTTCGTTTTGTGAAAATTGAGGAACCGTTTAAACGGTTCCTCAATTTTCACGGTGCATCCTTAGGTAGGCGGTGTTAATCACGCCATACCTGAGTAGATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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