Plant MITE

SE2950118

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_118
Aquilegia coerulea
SE2950118
PIF/harbinger
To19
scaffold_8:5833116-5833434
AAT
TGGCTACGTTTGGTTCAGGGAATTCAGATTCCCGGAAAG

Secondary structure and sequence

TSD TIR

5'

3'

AA      C          G              C      --------------------TAA   TAAAACCCGCTAATTTTGGACGGAAGATCAGAATTTAGATTCCGGTGAAGGCTAAAATAAAGGAATATGGTTTCCTTTTTTATAAAATGGAAACCAGTTTCT
  TGGCTA GTTTGGTTCA GGAATTCAGATTCC GGAAAG                       GGC                                                                                                      
  |||||| |||||||||| |||||||||||||| ||||||                       |||                                                                                                      A
  ACCGAT CAAACCAAGT CCTTAAGTCTAAGG CCTTTT                       TTG                                                                                                      
TA      A          G              C      CTCCCCCATAATTACCTTCTCTA   TTATCTTCTTTCTATTTCTTTAGTTTTCCGCCTCTATATCTCAAATTCTACCTTCCTTAAGATTCCTCTAGTTTTGTGAACTGTATAAACAGACCTGTTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2950118

AATGGCTACGTTTGGTTCAGGGAATTCAGATTCCCGGAAAGTAAGGCTAAAACCCGCTAATTTTGGACGGAAGATCAGAATTTAGATTCCGGTGAAGGCTAAAATAAAGGAATATGGTTTCCTTTTTTATAAAATGGAAACCAGTTTCTATTTTTGTCCAGACAAATATGTCAAGTGTTTTGATCTCCTTAGAATTCCTTCCATCTTAAACTCTATATCTCCGCCTTTTGATTTCTTTATCTTTCTTCTATTGTTATCTCTTCCATTAATACCCCCTCTTTTCCCGGAATCTGAATTCCGTGAACCAAACATAGCCAAT

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