SE2930129

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_129
  • Aquilegia coerulea
  • SE2930129
  • hAT
  • Hat29
  • scaffold_19:4172209-4172696
  • CTTGCAAT
  • TTGCAATTAGGCCTGTTAAA

Secondary structure and sequence

TSD    TIR
5'



3'
C      T    C    T   AC    CTTAGGCCCTTGGCCCGACCCTGTTCGGCCCGACCTTTTCGCTGAAAAAGCCCTCTAAGTCAAGCCCTCCCAATTTTAAGGGCCGGCCCGGCCCGGCCCTGATGTATATAAGGGTAGGGCTAGGGCCAATATTTAAAATGTGTAACCCGGCCCTAAGCCCGACCCTAATTAAGCCCTAATTAAGCCCTTTCATATTTTATAGTTAAATTCATTTATA
 TTGCAA TAGG CTGT AAA  GGCC                                                                                                                                                                                                                         
 |||||| |||| |||| |||  ||||                                                                                                                                                                                                                         T
 AACGTT ATCC GACA TTT  CCCG                                                                                                                                                                                                                         
T      C    C    C   -A    GCCCGATCCCGATCGGGCCGGGAAGTTGTGAATTCGGGATATCAGAATTCCCGGCCCAGTCGGGATGGGAATGATAAGTACTCCCGGCCCTATCCCGGCCCAACTGTAGTTTTATGAATTCGGGAATGGGATGGGAATGGGAAAAGATTTCCCAACTCCCGGCCCGAGTATCCAGCCCGGAATTTCGGGCTGTTAAAAATTGACACATAAAATAATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End