Plant MITE

SE3020002

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_139
Malus domestica
SE3020002
Mutator
MadM2
MDC020520.212:2365-2553
ATTCAACTT
TGGAAAATGTTAGGAGGCCACATTTTTGCACCATTTGATGTGCTAAGTGATTGTACATGCATGTCATGTCCATTGATGA

Secondary structure and sequence

TSD TIR

5'

3'

ATTCAACT   AA          - -------------        TT  C       G     C   G    T TA      TG C       T   T  AT
        TGG  AATGTTAGGA G             GCCACATT  TG ACCATTT ATGTG TAA TGAT G  CATGCA  T ATGTCCA TGA GA  
        |||  |||||||||| |             ||||||||  || ||||||| ||||| ||| |||| |  ||||||  | ||||||| ||| ||  T
        ACT  TTACGATTCT C             TGGTGTAA  AC TGGTAAA TATAC GTT ACTA C  GTATGT  A TGTAGGT ACT CT  
ATTAACTT   CA          A TAGTGTATAAATA        CC  A       G     T   A    - --      TG T       T   -  AT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020002

ATTCAACTTGGAAAATGTTAGGAGGCCACATTTTTGCACCATTTGATGTGCTAAGTGATTGTACATGCATGTCATGTCCATTGATGAATTTATCTCATTGGATGTTAGTTGTATGCATCAATTGTCATATGAAATGGTACACCAATGTGGTATAAATATGTGATCATCTTAGCATTACTCATTCAATTA

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