Plant MITE

SE3020006

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_143
Malus domestica
SE3020006
Mutator
MadM4
MDC000314.132:677-860
TTCTTATTG
GGGTAATGTTAGGGAGACTAAATTTGTAGACAAAATTTTGAAAACTAAAGGACATGGAAGTTGATTGG

Secondary structure and sequence

TSD TIR

5'

3'

 TTCTTATT                          T        TT   A        G  CA  GA G     T  TTTATTACT     --   GA
         GGGTAATGTTAGGGAGACTAAATTTG AGACAAAA  TTG AAACTAAA GA  TG  A TTGAT GG         TGAGC  GTT  
         |||||||||||||||||||||||||| ||||||||  ||| |||||||| ||  ||  | ||||| ||         |||||  |||   
         CCCATTACAATCCCTTTGATTTAAAC TCTGTTTT  AAC TTTGATTT CT  AC  T GATTA CC         ACTCG  CAA  
TTATTCTTT                          C        -T   G        A  AC  AG -     T  -------TT     TG   AT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020006

TTCTTATTGGGTAATGTTAGGGAGACTAAATTTGTAGACAAAATTTTGAAAACTAAAGGACATGGAAGTTGATTGGTTTATTACTTGAGCGTTGATAAACGTGCTCATTCCTATTAGTGACACATCATTTAGTTTGCAATTTTTGTCTCCAAATTTAGTTTCCCTAACATTACCCTTTCTTATT

Copy Cancel