SE3050010

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_147
  • Malus domestica
  • SE3050010
  • PIF/harbinger
  • MadP2
  • MDC019173.116:283-714
  • TAA
  • AGAGCAACTCCAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA       C    G -GG  G  GGTTGCTCGGGCGACAGGGGAGGAGAAAGGGCCTGAGGGCCGGTGGGAGCAGCTCCAGCGGGGAAGGGCCCGAGTGAGGGTGGGAGCCCGAGCGAAGGGGGGGTGGGGAGTCGACGGGCCTGTGGCCCGAGGGCTTTGCAATTTTTTATTTTTTTTGTGTCAGAGAGAGACACAGAGAGAGAGAGAGAGAGAG
  AGAGCAA TCCA C   AT CT                                                                                                                                                                                                 
  ||||||| |||| |   || ||                                                                                                                                                                                                  
  TCTCGTT AGGT G   TC TC                                                                                                                                                                                                 
AA       A    G GTA  -  GGGAAGGGGACCGTTAGGTGATAAGTTAGGTGGGATAATTTGTCATTGACGGAATTTACTTATCATTGATGGTAATTACTTGTCATTAACGGTAAATGTAGAGGTGGGAACCTTGGGAAGGGGGACCGTTATTCGTTAATTTTATTATCAAAAAAAAKAAACAAATTTTATTATTTTTMGGGGGYGGGAGAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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