SE3020012

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_149
  • Malus domestica
  • SE3020012
  • Mutator
  • MadM9
  • MDC010150.221:19643-19882
  • GGTCAAGAC
  • GTCAAGACGAATGAGGATCCTCTCAGGATCGTCCTTGTAAGGATTTCGGTAATCCTTCAATCACATCCGTTCATCGTACATTGTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
G   AA   -                A    CG  C    A          TA   C                       C       ---AGCT    T    C    A  GTTTA      AT
 GTC  GAC GAATGAGGATCCTCTC GGAT  TC TTGT AGGATTTCGG  ATC TTCAATCACATCCGTTCATCGTA ATTGTGC       AGTT TTGT AAGT CT     TATTTA  
 |||  ||| |||||||||||||||| ||||  || |||| ||||||||||  ||| ||||||||||||||||||||||| |||||||       |||| |||| |||| ||     ||||||   
 CAG  CTG CTTACTCCTAGGAGAG CCTG  AG AACA TCCTAGAGCC  TAG AGGTTAGTGTAGGCAAGTAGCAT TAGCATG       TTAG AACA TTTA GA     ATAAAT  
    AA   G                A    AG  A    C          -C   A                       A       CTAGTTT    T    -    -  --AAA      TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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