Plant MITE

SE3020013

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_150
Malus domestica
SE3020013
Mutator
MadM9
MDC011784.288:216-453
TTCATAAGA
AAGAGAGAGGATCCTCGCCGAATCCTCTTTGTGAGGATCTTGGGGATCCTCCAATTACATCCGTTTATTGTGTATCTTGTGGTCAGTTTTTGTTAGGTATTG

Secondary structure and sequence

TSD TIR

5'

3'

  TTCAT     A              A     C                        C        C               T         ---------------        A  T    TTTA
       AAGAG GAGGATCCTCGCCG ATCCT TTTGTGAGGATCTTGGGGATCCTC AATTACAT CGTTTATTGTGTATC TGTGGTCAG               TTTTTGTT GG ATTG    
       ||||| |||||||||||||| ||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||               |||||||| || ||||     
       TTCTC CTCCTAGGAGCGGC TAGGA AAACACTCCTAGAACCCCTAGGAG TTAGTGTA GTAAATAGCATGTAG ACGCTAGTC               AAAAATAA TT TAAC    
AATACTT     A              C     -                        T        A               C         TTTAGTAACATTTAA        A  T    TTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020013

TTCATAAGAGAGAGGATCCTCGCCGAATCCTCTTTGTGAGGATCTTGGGGATCCTCCAATTACATCCGTTTATTGTGTATCTTGTGGTCAGTTTTTGTTAGGTATTGTTTATATTCAATTTTAAATAAAAAAATTTACAATGATTTCTGATCGCACGATGTACGATAAATGAATGTGATTTGAGGATCCCCAAGATCCTCACAAAAGGATCCGGCGAGGATCCTCACTCTTTTCATAA

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