Plant MITE

SE3020017

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_154
Malus domestica
SE3020017
Mutator
MadM11
MDC020215.146:710-872
TATATTATG
ATATTATGGGGTGTGATATTCACACACCCCTTTTTACTTCTCCCACACCTTTTTAGTTT

Secondary structure and sequence

TSD TIR

5'

3'

T   T   -        A                          C         -       TCGG    CG    GGATGAA
 ATA TAT GGGGTGTG TATTCACACACCCCTTTTTACTTCTC CACACCTTT TTAGTTT    CCGT  GATC       
 ||| ||| |||||||| |||||||||||||||||||||||||| ||||||||| |||||||    ||||  ||||       T
 TAT ATA CCCCACAC ATAGGTGTGTGGGGAAAAATGAAGAG GTGTGGGAA AATTAAA    GGCA  CTAG       
    T   T        G                          T         C       TACA    -A    AAGAAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020017

TATATTATGGGGTGTGATATTCACACACCCCTTTTTACTTCTCCCACACCTTTTTAGTTTTCGGCCGTCGGATCGGATGAATTGAAGAAGATCAACGGACATAAATTAACAAGGGTGTGTGAGAAGTAAAAAGGGGTGTGTGGATAGCACACCCCTATATTAT

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