SE3020022

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_159
  • Malus domestica
  • SE3020022
  • Mutator
  • MadM11
  • MDC011713.137:50063-50226
  • TTAATTTTG
  • AATTTTGGGATGTGCTATCCACACACTTCATTTTACTTCTTACACATCCCTTGATAATTTATGTCCGTTGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT    TT   A    C        C              C       TC    GA      A   C     -   TTCTTCA
  AATT  GGG TGTG TATCCACA ACTTCATTTTACTT TTACACA  CCTT  TAATTT TGT CGTTG ATC       
  ||||  ||| |||| |||||||| |||||||||||||| |||||||  ||||  |||||| ||| ||||| |||       A
  TTAA  CCC ACAT ATAGGTGT TGGGGTAAAATGAA AGTGTGT  GGAA  ATTAAA GCA GCAGC TAG       
TT    TT   C    T        T              A       --    AA      A   A     C   CCTACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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