Plant MITE

SE3020024

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_161
Malus domestica
SE3020024
Mutator
MadM15
MDC002440.230:2518-2734
TTTAACAAT
GGAAAGGGATCCTCTCCGAATTCCTTCCACCTAATCCTCCTCATAAAAAAATCCAGGCTCTTGAAATTTGATCCAACGGCTAA

Secondary structure and sequence

TSD TIR

5'

3'

TTTAACAAT                 GA        C       C        A   A    CA  C                         AAAC    GCCCACTCTA
         GGAAAGGGATCCTCTCC  ATTCCTTC ACCTAAT CTCCTCAT AAA AATC  GG TCTTGAAATTTGATCCAACGGCTAA    AGGG          
         |||||||||||||||||  |||||||| ||||||| |||||||| ||| ||||  || |||||||||||||||||||||||||    ||||          A
         CCTTTCCCTAGGAGAGG  TAAGGAAG TGGATTA GAGGAGTA TTT TTAG  CC GGAATTTTAAACTAGGTTGCCGATT    TCAA          
TAACAATTT                 AC        A       A        G   G    AC  A                         ----    TAATATTGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020024

TTTAACAATGGAAAGGGATCCTCTCCGAATTCCTTCCACCTAATCCTCCTCATAAAAAAATCCAGGCTCTTGAAATTTGATCCAACGGCTAAAAACAGGGGCCCACTCTAAAAGTTATAATAACTTTAGCCGTTGGATCAAATTTTAAGGACCCAGATTGTTTGATGAGGAGAATTAGGTAGAAGGAATCAGGAGAGGATCCCTTTCCTTTAACAAT

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