SE3020026

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_163
  • Malus domestica
  • SE3020026
  • Mutator
  • MadM10
  • MDC022726.213:962-1200
  • TATGAAATG
  • ATGGGAGGCAGATTGTCTGCCCTCCTGTTATGGTGCCCCTTCCCATCCCCTCCTATTTGTGCGGTCACGGTTAAGCTACGTCAACATTTTATATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATGAA                                      C   C     C                             C                CCTATTG         TTATT
      ATGGGAGGCAGATTGTCTGCCCTCCTGTTATGGTGCCC TTC CATCC CTCCTATTTGTGCGGTCACGGTTAAGCTA GTCAACATTTTATATT       TTTTTTGTC     
      |||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||       |||||||||      
      TATCCTCCGTCTAACAGATGGGAGGACAATATCACGGG AAG GTAGG GAGGATAAACACGCCAGTGCCAATTCGGT CAGTTGTAAAATATAA       AAAAAATAG     
GTAAAG                                      -   A     A                             A                ----CTA         CTCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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