SE3020031

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_168
  • Malus domestica
  • SE3020031
  • Mutator
  • MadM4
  • MDC011616.211:1701-1891
  • TATACTTTT
  • GGGTGATGCTAGGGAGACTAAATTTGTAGACAAATAATTTGCAAACTAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTTTTA        C        C                TAA    C         -    --    ATCAATAGAAATGAGCACGTTCATCA
          GGGTGATG TAGGGAGA TAAATTTGTAGACAAA   TTTG AAACTAAAT AATG  TGTC                          
          |||||||| |||||||| ||||||||||||||||   |||| ||||||||| ||||  ||||                           
          TCCGTTAC ATCCCTCT ATTTAAACATCTGTTT   AAGT TTTGATTTA TGTA  TTCA                          
 ATTTTCATA        A        C                -TA    A         C    TC    ACTACTAACCTAATACTGAATTTGCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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