Plant MITE

SE3020032

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_169
Malus domestica
SE3020032
Mutator
MadM18
MDC009991.250:5002-5191
ATTGTCTTT
GTCTTTGAGAAATGCTAAAGAGACTCTCTCATAGT

Secondary structure and sequence

TSD TIR

5'

3'

 ATT T TT                        -CAT   AYAATTCTRCATAY       CTRA     -CAG    A  T    TTACATGCCAA
    G C  TGAGAAATGCTAAAGAGACTCTCT    AGT              ACTCTTT    CTTTA    TTTA CG CAAT           
    | |  ||||||||||||||||||||||||    |||              |||||||    |||||    |||| || ||||            
    C G  ACTCTTTACGATTTCTCTGAGAGA    TCA              TGAGAGA    GAAGT    AAAT GT GTTA           
TTTT T TT                        ATTT   CCTWAAAAAATACT       TAGA     ATAA    C  -    TAAAATATTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020032

ATTGTCTTTGAGAAATGCTAAAGAGACTCTCTCATAGTAYAATTCTRCATAYACTCTTTCTRACTTTACAGTTTAACGTCAATTTACATGCCAACATTATAAAATATTGTGCTAAAAATATGAAGAGATAGAGAGTTCATAAAAAAWTCCACTTTTAAGAGAGTCTCTTTAGCATTTCTCATTGTCTTTT

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