Plant MITE

SE3020036

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_173
Malus domestica
SE3020036
Mutator
MadM20
MDC012928.388:3282-3499
CCAAATAAA
GGAACTGGATCCTTTCTGAGGCAAACCCTCAGAACCCTGCTGAGCGACGAACATGGGCCGTTGAATTTCGATCCAACAGCTACAA

Secondary structure and sequence

TSD TIR

5'

3'

CCAAATAAA   A                          A AAC      G                     A            CA       TTATTATAACTTTA G    AC
         GGA CTGGATCCTTTCTGAGGCAAACCCTC G   CCTGCT AGCGACGAACATGGGCCGTTG ATTTCGATCCAA  GCTACAA              A AGGG  
         ||| |||||||||||||||||||||||||| |   |||||| ||||||||||||||||||||| ||||||||||||  |||||||              | ||||   
         CCT GACCTAGGAGAGGCTCCGTTTGGGAG C   GGACGA TCGCTGTTTGTGCCTGGCAAC TAAAGCTAGGTT  CGATGTT              T TCCC  
AAATAAACC   G                          C CTA      A                     C            AC       -------------- G    CC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020036

CCAAATAAAGGAACTGGATCCTTTCTGAGGCAAACCCTCAGAACCCTGCTGAGCGACGAACATGGGCCGTTGAATTTCGATCCAACAGCTACAATTATTATAACTTTAAGAGGGACCCCCCTGTTTGTAGCCATTGGATCGAAATCCAACGGTCCGTGTTTGTCGCTAAGCAGGATCCCGAGGGTTTGCCTCGGAGAGGATCCAGGTCCCCAAATAAA

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