Plant MITE

SE3020038

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_175
Malus domestica
SE3020038
Mutator
MadM22
MDC004311.132:16457-16673
CTTTGATAC
GGAACCGGATCTCCTCCKGACCTAAAGAAACTGAGCCCAAGGATTAAATGATCCGGACCATTGAAATTTAATCCAACAGCAGCAAACAGAGGGTCCTTCT

Secondary structure and sequence

TSD TIR

5'

3'

CTTTGATAC          C    - CK        GA        C                   AC A         A   C   A  A    ------------AC     G
         GGAACCGGAT TCCT C  GACCTAAA  AACTGAGC CAAGGATTAAATGATCCGG  C TTGAAATTT ATC AAC GC GCAA              AGAGG 
         |||||||||| |||| |  ||||||||  |||||||| |||||||||||||||||||  | ||||||||| ||| ||| || ||||              ||||| T
         CCTTGGCCTA AGGA G  CTGGGTTT  TTGACTCG GTTCCTAGTTTACTAGGCC  G AACTTTAAA TAG TTG CG TGTT              TCTTC 
CATGGTTTC          -    A CC        GG        A                   CA Y         C   A   C  A    AATAATATTRAAAA     C

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020038

CTTTGATACGGAACCGGATCTCCTCCKGACCTAAAGAAACTGAGCCCAAGGATTAAATGATCCGGACCATTGAAATTTAATCCAACAGCAGCAAACAGAGGGTCCTTCTAAAARTTATAATAATTGTAGCCGTTAGATCAAATTTCAAYGACCCGGATCATTTGATCCTTGAGCTCAGTTGGTTTGGGTCCCGAAGGAATCCGGTTCCCTTTGGTAC

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