SE3050042

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_179
  • Malus domestica
  • SE3050042
  • PIF/harbinger
  • MadP4
  • MDC021304.66:22082-22516
  • TTA
  • AGGAGGGTGTATTCAATTGAGAATTTGAGAGATTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TT   A               A  A      A      A     TTTATAAATCCATGGATTTTTATGGAGTTTAATTGATTTGTAGAGATTCCATGTAAAATTTTGATTCAATTCCCTCGAAATCTCTTGGGGGGAGGTGAGATTTGTGGATGCTCAAAATACACTACGAAATCTCTCCAATTCCCTCTAATTCCTCAACTTTCTCAAATTCTTTAA
  AGG GGGTGTATTCAATTG GA TTTGAG GATTTT ATGGA                                                                                                                                                                              
  ||| ||||||||||||||| || |||||| |||||| |||||                                                                                                                                                                               
  TCC CCCACATAAGTTAAT CT AAACTC CTAAAA TTAAG                                                                                                                                                                              
AT   C               C  A      C      -     AAAATTACTTAGATTCCCATAAGTTAGTCCTTAAATTCACTAAGAGACTTTAAGTTACACATAAGTTAGTTCTAAAATTCTATCAAATACTTTTAGGAATCTTTAGGCCCACATAAGTTAATCTTAAAATTTCTTCAAATATTGTAAGGTCCACATAAGTTAATCTTAAACTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End