Plant MITE

SE3020045

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_182
Malus domestica
SE3020045
Mutator
MadM24
MDC039357.9:622-837
TTTTATTTT
GAGACAGGATACCCGT

Secondary structure and sequence

TSD TIR

5'

3'

TTTTATTTTT    C     A C   ---      CTTTAATCCTGTCTGTTTATCGTACATCGTGCGGTCAGTTTTCGTCAGATACGATTTGTGTTTAATTTTAAATAA
          GAGA AGGAT C CGT   TGGATT                                                                           
          |||| ||||| | |||   ||||||                                                                            
          CTCT TCCTA G GCG   TAGGAG                                                                           
 TTTTTATTT    A     A A   GCC      AAACATTCCTAAGACCTAGGAAATTAGGACAGTAAAGTAGTATATAGCACGCCAGTCTTTAGTAAAACTTAATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020045

TTTTATTTTTGAGACAGGATACCCGTTGGATTCTTTAATCCTGTCTGTTTATCGTACATCGTGCGGTCAGTTTTCGTCAGATACGATTTGTGTTTAATTTTAAATAATATAATTCAAAATGATTTCTGACCGCACGATATATGATGAAATGACAGGATTAAAGGATCCAGAATCCTTACAAAGAGGATCCGGCGAGAATCCTATCTCTTTATTTTT

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