Plant MITE

SE3020048

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_185
Malus domestica
SE3020048
Mutator
MadM25
MDC006592.259:7265-7437
TTTTAATTA
TTAATTAAGGGAACTTTAACGAAAAG

Secondary structure and sequence

TSD TIR

5'

3'

TT         -    CT    C      CACCC   AC  TTC       C AAAAACCATWTTTTT   CT A    TCAATCC   TAC
  TTAATTAAG GGAA  TTAA GAAAAG     GGT  TG   ACTTTAA G               ACA  A AAAG       TGA   
  ||||||||| ||||  |||| ||||||     |||  ||   ||||||| |               |||  | ||||       |||    
  AATTAATTT CCTT  GATT CTTTTC     CCG  AC   TGAAATT C               TGT  T TTTC       ACT   
           T    TT    A      -----   -A  TTT       - -AAAATTACTATTCC   TT A    CCATTTC   TAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020048

TTTTAATTAAGGGAACTTTAACGAAAAGCACCCGGTACTGTTCACTTTAACGAAAAACCATWTTTTTACACTAAAAAGTCAATCCTGATACTATTCACTTTACCCTTTATTTTGTCCTTATCATTAAAACTTAAAGTTTTCAAGCCCTTTTCATTAGTTTTCCTTTTAATTAA

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