SE3020049

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_186
  • Malus domestica
  • SE3020049
  • Mutator
  • MadM26
  • MDC014161.288:7992-8218
  • ATGATGTTG
  • GATGTTGGGATTTGGATCCACTCCGGACCTTAGTGTCCGGAGCCTAGGGATCAAATTATATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
AT      -G            A                C        A             A   AC G   -  TGGTGTGTAAAAGAAATCAGAGTCGTTAGTTTGTGTGGTG
  GATGTT  GGATTTGGATCC CTCCGGACCTTAGTGT CGGAGCCT GGGATCAAATTAT TGG  C TTG AT                                        
  ||||||  |||||||||||| |||||||||||||||| |||||||| ||||||||||||| |||  | ||| ||                                        G
  TTGTAG  CCTAAACCTAGG GAGGCCTGGAATCACA GCTTCGGA CCCTAGTTTAGTA ACC  C AAC TG                                        
 G      TA            C                A        G             A   -- -   G  TTTAAGTTAGGTTGCCAGGAGTAATTAAGTAAAAGGACCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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