SE3030050

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_187
  • Malus domestica
  • SE3030050
  • hAT
  • Madh3
  • MDC019603.257:24538-25212
  • AGCATATT
  • GC

Secondary structure and sequence

TSD    TIR
5'



3' 
     A  ATAT             ----C  -  C  TTTGGGGACGAAAATGCTATATCCATCCCCATAATCACGAAAATTAACCATATCCATAACCGCAAATTAATCATTGGGTATTATCCATAATCATACCCACCGGATAACGGATTTTCCATCAGTTAACGGTTATATCCATCTTCATTAATACAAAAAATATATTCGTCCAATTGACGCATGATAATTTAGTAAATATTAATTTCGTCACTAAATATTTGATGTATAAAATGATTTAATTATTGGATCTTGTGGAACATAAAAATTAAAGCTAAACATTGATAATGTTGCTTGATCTTTGATATCTCGC
      GC    TTAGGGATGGCAA     GG AT GG                                                                                                                                                                                                                                                                                                                   
      ||    |||||||||||||     || || ||                                                                                                                                                                                                                                                                                                                    
      CG    AATCCCTACCGTT     TG CA AT                                                                                                                                                                                                                                                                                                                   
TTTATA  ----             AAGAT  G  -  TTGAACTATTGGCACCTATTGGCGGACTTACCTAACCTAAACTCATACTTTTAAGCCCATATAAAACCCCTATCCCTTTTTGGCACTTATAATAAGCCAATACCAATATCCTCAGGGGTTAGGTATAGGCATGGGCTTAGGCTTGGCTTATTATATATTATATTAATATACATATATATACATAAAGTAATAAATGGCTTAGGTAATGGAATTCTTATGTTTTTAACGTAATACACTCAAAATAAAACACCGTTTCAAGTTTTCAAAAATATACTTATTTTTAGATACTCTTAAATTATCATAAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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